STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4152TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: rpc:RPC_4093 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (158 aa)    
Predicted Functional Partners:
RPE_4151
PFAM: aldo/keto reductase; KEGG: rpd:RPD_3895 aldo/keto reductase.
       0.532
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: rpc:RPC_1096 flagellar hook-basal body complex protein FliE.
    
   0.434
fliE-2
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rpc:RPC_1519 flagellar hook-basal body complex protein FliE.
    
   0.434
RPE_3628
PFAM: CheC domain protein; KEGG: rpc:RPC_4604 CheC, inhibitor of MCP methylation.
    
   0.434
RPE_3638
PFAM: CheC domain protein; KEGG: rpc:RPC_4614 CheC, inhibitor of MCP methylation.
    
   0.434
RPE_0778
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.400
RPE_0968
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
   0.400
RPE_1041
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.400
RPE_1152
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
   0.400
RPE_1177
PFAM: flagellar hook capping protein; KEGG: rpc:RPC_1116 flagellar hook capping protein.
    
   0.400
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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