STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4166KEGG: rpd:RPD_3912 hypothetical protein. (277 aa)    
Predicted Functional Partners:
RPE_4165
KEGG: rpa:RPA4315 hypothetical protein.
 
     0.757
RPE_0695
KEGG: rpc:RPC_0768 hypothetical protein.
  
     0.731
RPE_3752
Caulobacter-type pilus biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: rpc:RPC_3714 pilus assembly protein CpaD.
  
     0.721
RPE_1740
PFAM: cytochrome c, class I; KEGG: rpc:RPC_4040 hypothetical protein.
  
     0.692
RPE_4394
KEGG: rpc:RPC_4334 hypothetical protein.
  
     0.680
RPE_0434
PFAM: protein of unknown function DUF1150; KEGG: rpc:RPC_0410 protein of unknown function DUF1150.
  
     0.678
RPE_2794
PFAM: Invasion associated locus B family protein; KEGG: rpc:RPC_2614 invasion associated locus B.
 
     0.676
RPE_1755
KEGG: rpc:RPC_4024 hypothetical protein.
  
     0.630
RPE_1397
KEGG: nha:Nham_1099 hypothetical protein.
  
     0.627
RPE_4510
KEGG: rpc:RPC_4438 hypothetical protein.
  
     0.621
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.