STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4183KEGG: rpc:RPC_4131 hypothetical protein. (146 aa)    
Predicted Functional Partners:
RPE_2895
KEGG: rpc:RPC_2763 putative outer-membrane protein precursor.
  
     0.633
RPE_4289
KEGG: rpc:RPC_4252 hypothetical protein.
  
     0.601
RPE_1996
KEGG: rpc:RPC_2084 hypothetical protein.
  
     0.551
RPE_2775
KEGG: rpc:RPC_2595 hypothetical protein.
  
     0.542
RPE_4690
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4732 hypothetical protein.
  
     0.528
RPE_4730
KEGG: rpc:RPC_4765 hypothetical protein.
  
     0.528
RPE_1878
KEGG: rpc:RPC_1785 hypothetical protein.
  
     0.508
RPE_2889
KEGG: rpd:RPD_2756 putative outer membrane protein.
  
     0.503
RPE_4184
KEGG: rpc:RPC_4132 hypothetical protein.
       0.502
RPE_4061
Phasin; TIGRFAM: phasin family protein; phasin; KEGG: rpc:RPC_3940 phasin 2.
  
     0.470
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.