STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4214PFAM: transposase IS116/IS110/IS902 family protein; KEGG: rpc:RPC_4622 transposase IS116/IS110/IS902. (346 aa)    
Predicted Functional Partners:
RPE_4210
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4025 putative branched-chain amino acid ABC transport system ATP-binding protein.
       0.500
RPE_4211
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1589 ABC transporter related.
       0.500
RPE_4212
PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.500
RPE_4213
PFAM: inner-membrane translocator; KEGG: rpa:RPA4028 possible ABC transport system permease protein.
       0.500
RPE_4209
PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rpb:RPB_1584 methionine synthase, vitamin-B12 independent.
       0.410
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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