STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4243KEGG: ret:RHE_CH01595 hypothetical protein. (190 aa)    
Predicted Functional Partners:
RPE_4242
TIGRFAM: methyltransferase FkbM family; KEGG: sma:SAV5730 hypothetical protein.
       0.769
RPE_2913
PFAM: ETC complex I subunit conserved region; KEGG: rpb:RPB_2935 ETC complex I subunit conserved region.
  
  
 0.559
RPE_4739
PFAM: peptidase U32; KEGG: rpc:RPC_4778 peptidase U32.
  
  
 0.559
RPE_4740
PFAM: peptidase U32; KEGG: rpc:RPC_4779 peptidase U32.
  
  
 0.559
RPE_1948
PFAM: protein of unknown function DUF692; KEGG: sme:SMb20529 hypothetical protein; Belongs to the UPF0276 family.
   
    0.509
RPE_4246
PFAM: Cephalosporin hydroxylase; KEGG: pfo:Pfl_1516 cephalosporin hydroxylase.
     
 0.435
RPE_4244
Hypothetical protein.
       0.424
RPE_1007
Heme peroxidase; PFAM: Hemolysin-type calcium-binding region; Animal heme peroxidase; KEGG: rpd:RPD_1560 Animal heme peroxidase.
 
     0.417
RPE_1623
KEGG: lxx:Lxx01200 hypothetical protein.
 
    0.407
RPE_0873
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
   
    0.404
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.