STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4249PFAM: ABC-2 type transporter; KEGG: dde:Dde_0841 polysaccharide ABC transporter, permease protein. (276 aa)    
Predicted Functional Partners:
RPE_4248
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0851 ATPase.
 
 0.999
RPE_4247
PFAM: glycosyl transferase, family 2; KEGG: sco:SCO0398 glycosyl transferase.
 
  
 0.852
RPE_1091
PFAM: polysaccharide export protein; KEGG: gme:Gmet_1444 polysaccharide export protein.
  
  
 0.795
RPE_2844
PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein.
  
  
 0.795
RPE_3496
PFAM: polysaccharide export protein; KEGG: sme:SMb21073 putative OMA family outer membrane saccharide export protein, similar to ExoF.
  
  
 0.795
RPE_4917
PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein.
  
  
 0.795
RPE_1102
PFAM: glycosyl transferase, family 2; KEGG: ppu:PP3137 glycosyl transferase, group 2 family protein.
  
  
 0.777
RPE_4250
PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_3057 glycosyl transferase, group 1.
 
  
 0.723
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
  
 0.693
RPE_4240
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sco:SCO4880 transferase.
 
   
 0.685
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.