STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4252PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sdn:Sden_2654 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)    
Predicted Functional Partners:
RPE_2842
PFAM: sugar transferase; KEGG: rpd:RPD_2694 sugar transferase.
  
 0.947
RPE_4251
KEGG: syn:slr2115 hypothetical protein.
  
  
 0.925
RPE_4218
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: rpc:RPC_4163 polysaccharide biosynthesis protein CapD.
 
  
 0.905
RPE_1455
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rpc:RPC_1434 oxidoreductase-like.
  
 0.830
RPE_1516
dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA3925 putative dTDP-glucose 4,6-dehydratase.
  
  
 0.825
RPE_4240
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sco:SCO4880 transferase.
  
  
 0.766
RPE_4253
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: tbd:Tbd_1881 alpha-D-glucose-1-phosphate cytidylyltransferase.
  
  
 0.744
RPE_4236
PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: dre:322780 zgc:77126.
 
  
 0.683
RPE_4237
PFAM: Capsule polysaccharide biosynthesis; KEGG: syn:slr2115 hypothetical protein.
  
  
 0.683
RPE_4256
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.672
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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