STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (323 aa)    
Predicted Functional Partners:
RPE_4260
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: gox:GOX1611 GDP-6-deoxy-D-lyxo-4-hexulose reductase.
 
0.984
RPE_4272
KEGG: rpc:RPC_4235 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
 
 
 0.981
RPE_3503
PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: aba:Acid345_0895 NAD-dependent epimerase/dehydratase.
 0.959
RPE_2842
PFAM: sugar transferase; KEGG: rpd:RPD_2694 sugar transferase.
  
  
 0.956
RPE_3497
KEGG: rpc:RPC_4235 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
 
  
 0.824
RPE_4218
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: rpc:RPC_4163 polysaccharide biosynthesis protein CapD.
  
  
 0.815
RPE_1093
PFAM: sugar transferase; KEGG: bja:blr2358 probable glycosyl transferase.
 
  
 0.796
RPE_3504
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein.
  
  
 0.769
RPE_3498
PFAM: lipopolysaccharide biosynthesis; KEGG: ccr:CC0164 hypothetical protein.
 
  
 0.704
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
 
 0.683
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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