STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4285KEGG: rpc:RPC_4248 hypothetical protein. (224 aa)    
Predicted Functional Partners:
RPE_0708
PFAM: response regulator receiver; KEGG: rpc:RPC_0781 response regulator receiver domain protein (CheY-like).
  
 0.968
RPE_1557
KEGG: rpc:RPC_1524 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
 0.962
RPE_4270
Two-component system, cell cycle response regulator CtrA; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpd:RPD_3672 response regulator receiver.
  
 0.962
RPE_0465
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: rpc:RPC_0382 PAS/PAC sensor signal transduction histidine kinase.
  
 
 0.780
RPE_4288
PFAM: Uncharacterised conserved protein UCP033924; KEGG: rpc:RPC_4251 uncharacterised conserved protein UCP033924.
 
     0.767
RPE_4268
TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ.
  
     0.748
RPE_0964
PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153.
  
    0.746
RPE_0882
KEGG: rpc:RPC_4703 hypothetical protein.
  
     0.732
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.708
RPE_2333
KEGG: rpc:RPC_3126 hypothetical protein.
  
     0.706
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.