STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4313PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: rpc:RPC_4270 protein of unknown function DUF463, YcjX-like protein. (488 aa)    
Predicted Functional Partners:
RPE_4314
PFAM: conserved hypothetical protein 1620; KEGG: rpc:RPC_4271 conserved hypothetical protein 1620.
 
  
 0.997
RPE_0091
Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: rpc:RPC_0581 peptidase U6, penicillin-insensitive murein endopeptidase.
  
     0.563
RPE_4312
PFAM: Hly-III family protein; KEGG: rpc:RPC_4269 Hly-III related proteins.
       0.540
RPE_2037
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_2129 ErfK/YbiS/YcfS/YnhG.
  
     0.495
RPE_0686
PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_0764 alpha/beta hydrolase fold.
  
     0.487
RPE_4315
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: nwi:Nwi_3054 cold-shock protein, DNA-binding.
       0.472
RPE_4106
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882.
  
     0.471
RPE_0410
PFAM: Thioredoxin domain; KEGG: rpa:RPA0267 possible thioredoxin.
   
    0.453
RPE_2078
ErfK/YbiS/YcfS/YnhG family protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpd:RPD_3424 ErfK/YbiS/YcfS/YnhG.
  
     0.444
RPE_0866
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpc:RPC_4722 ErfK/YbiS/YcfS/YnhG.
  
     0.443
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.