STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4328TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: rpc:RPC_1345 methylated-DNA--protein-cysteine methyltransferase. (180 aa)    
Predicted Functional Partners:
RPE_4329
PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_1342 glycosyl transferase, group 1.
  
    0.688
RPE_1497
PFAM: UspA domain protein; KEGG: rpc:RPC_1477 UspA.
  
    0.495
RPE_1729
PFAM: UspA domain protein; KEGG: rpc:RPC_4050 UspA.
  
    0.495
RPE_1730
PFAM: UspA domain protein; KEGG: rpc:RPC_4049 hypothetical protein.
  
    0.495
RPE_4330
PFAM: glycosyl transferase, group 1; KEGG: gox:GOX1614 putative hexosyltransferase.
  
    0.486
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
 
 
 0.486
RPE_3932
PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rpc:RPC_3809 serine/threonine protein kinase.
  
    0.459
RPE_3556
Recombination protein MgsA; PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rpb:RPB_2324 AAA_5 ATPase.
 
   
 0.456
RPE_0386
Chromosome segregation ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rpc:RPC_0288 cobyrinic acid a,c-diamide synthase.
 
    0.430
RPE_4855
PFAM: HhH-GPD family protein; KEGG: rpa:RPA4755 possible DNA-3-methyladenine glycosidase II.
  
  
 0.429
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.