STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4330PFAM: glycosyl transferase, group 1; KEGG: gox:GOX1614 putative hexosyltransferase. (383 aa)    
Predicted Functional Partners:
RPE_2842
PFAM: sugar transferase; KEGG: rpd:RPD_2694 sugar transferase.
  
  
 0.624
RPE_1273
KEGG: rpc:RPC_1226 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
   
 0.618
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.618
RPE_4331
PFAM: O-antigen polymerase; KEGG: rpc:RPC_1341 O-antigen polymerase.
  
  
 0.616
RPE_4329
PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_1342 glycosyl transferase, group 1.
 
     0.603
RPE_4250
PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_3057 glycosyl transferase, group 1.
  
     0.600
RPE_0810
PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_1365 glycosyl transferase, group 1.
  
     0.545
RPE_4256
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.539
RPE_1516
dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA3925 putative dTDP-glucose 4,6-dehydratase.
 
  
 0.529
RPE_3509
PFAM: glycosyl transferase, group 1; KEGG: hma:rrnAC1017 LPS glycosyltransferase.
  
     0.526
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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