STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4333PFAM: Animal heme peroxidase; KEGG: gvi:glr3599 hypothetical protein. (515 aa)    
Predicted Functional Partners:
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
  
  
 0.613
RPE_4585
KEGG: ana:alr0276 hypothetical protein.
  
     0.594
RPE_1921
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_1821 hypothetical protein.
   
   0.522
RPE_1922
Hypothetical protein; KEGG: rpd:RPD_1991 phage conserved hypothetical protein BR0599.
   
   0.522
RPE_1085
Type I secretion system ATPase; KEGG: bja:bll6293 HlyB/MsbA family ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase.
  
  
 0.501
RPE_4681
KEGG: bja:bll6187 hypothetical protein.
  
     0.492
RPE_4642
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sil:SPOA0205 serine protease, subtilase family.
 
  
 0.489
RPE_4641
Hypothetical protein.
  
  
 0.456
RPE_1404
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpd:RPD_4046 TonB-dependent receptor.
    
 
 0.443
RPE_2095
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_4299 TonB-dependent receptor.
    
 
 0.443
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.