STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4350PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpb:RPB_1167 ErfK/YbiS/YcfS/YnhG. (228 aa)    
Predicted Functional Partners:
RPE_3407
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: rpc:RPC_3328 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.592
RPE_4106
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882.
 
     0.501
RPE_4105
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_3977 peptidoglycan-binding domain 1.
 
  
 0.489
RPE_4349
PFAM: Mg2+ transporter protein, CorA family protein; KEGG: rpc:RPC_4290 Mg2+ transporter protein, CorA-like.
       0.438
RPE_4712
KEGG: rpc:RPC_4757 hypothetical protein.
  
     0.432
RPE_0139
PFAM: protein of unknown function DUF949; KEGG: rpc:RPC_0527 protein of unknown function DUF949.
 
  
 0.429
RPE_0443
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_0401 hypothetical protein.
  
     0.419
RPE_3457
PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_2909 lytic transglycosylase, catalytic.
  
     0.418
RPE_4314
PFAM: conserved hypothetical protein 1620; KEGG: rpc:RPC_4271 conserved hypothetical protein 1620.
  
     0.413
RPE_0091
Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: rpc:RPC_0581 peptidase U6, penicillin-insensitive murein endopeptidase.
  
     0.412
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.