STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4355PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_4296 beta-lactamase-like. (310 aa)    
Predicted Functional Partners:
RPE_3526
PFAM: NUDIX hydrolase; KEGG: rpd:RPD_3111 NUDIX hydrolase.
 
     0.835
RPE_3382
PFAM: NUDIX hydrolase; KEGG: rpa:RPA3127 NUDIX hydrolase.
 
     0.647
RPE_4106
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rpc:RPC_3978 protein of unknown function DUF882.
 
    0.556
RPE_2023
PFAM: phosphopantetheine-binding; KEGG: rpc:RPC_2111 phosphopantetheine-binding.
  
 
 
 0.542
RPE_4356
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_1264 acyl-CoA dehydrogenase-like.
  
   0.530
RPE_1676
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_1647 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.500
RPE_0882
KEGG: rpc:RPC_4703 hypothetical protein.
  
     0.489
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
 0.462
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.447
RPE_1893
PFAM: protein of unknown function DUF264; KEGG: rpc:RPC_1800 protein of unknown function DUF264.
  
     0.438
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.