STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4387KEGG: rpc:RPC_4329 hypothetical protein. (87 aa)    
Predicted Functional Partners:
RPE_4386
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4328 hypothetical protein.
 
     0.858
RPE_2325
PFAM: transglutaminase family protein cysteine peptidase, BTLCP; KEGG: rpc:RPC_3134 transglutaminase-like cysteine peptidase, BTLCP.
  
     0.728
RPE_4268
TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ.
  
     0.727
RPE_1878
KEGG: rpc:RPC_1785 hypothetical protein.
  
     0.725
RPE_2329
KEGG: nha:Nham_1646 hypothetical protein.
  
     0.689
RPE_0128
KEGG: rpc:RPC_0544 hypothetical protein.
  
     0.676
RPE_2308
KEGG: rpc:RPC_3148 hypothetical protein.
  
     0.674
RPE_1879
PFAM: protein of unknown function DUF1214; KEGG: rpc:RPC_1786 protein of unknown function DUF1214.
  
     0.661
RPE_3749
PFAM: peptidase A24A, prepilin type IV; KEGG: rpc:RPC_3711 peptidase A24A, prepilin type IV.
  
     0.643
RPE_2326
PFAM: type IV pilus assembly PilZ; KEGG: rpc:RPC_3133 type IV pilus assembly PilZ.
  
     0.641
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.