STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4463Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: rpb:RPB_4334 twin-arginine translocation pathway signal. (335 aa)    
Predicted Functional Partners:
RPE_2147
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpc:RPC_3268 protein of unknown function DUF112, transmembrane.
 
  
 0.900
RPE_1955
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpc:RPC_1851 protein of unknown function DUF112, transmembrane.
 
  
 0.899
RPE_2146
PFAM: protein of unknown function DUF1468; KEGG: rpb:RPB_2033 TctB subunit of the tripartite tricarboxylate transport(TTT) family.
 
  
 0.812
RPE_1956
KEGG: rpc:RPC_1852 hypothetical protein.
 
  
 0.716
RPE_4462
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rpc:RPC_4400 TRAP transporter solute receptor, TAXI family.
 
   
 0.547
RPE_4461
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_4399 TRAP transporter, 4TM/12TM fusion protein.
 
     0.420
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.