STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4465Response regulator receiver modulated diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: rpd:RPD_4230 putative cylclic diguanylate phosphodiesterase. (405 aa)    
Predicted Functional Partners:
RPE_2032
Diguanylate cyclase with PAS/PAC sensor; KEGG: rpd:RPD_3460 GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.868
RPE_0391
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0283 diguanylate cyclase (GGDEF domain).
 
  
 0.855
RPE_3308
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpa:RPA3076 putative diguanylate cyclase (GGDEF).
  
 0.850
RPE_2859
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_2698 diguanylate cyclase (GGDEF domain).
 
  
 0.849
RPE_3944
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3822 diguanylate cyclase (GGDEF domain).
  
 0.848
RPE_3799
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpb:RPB_3574 diguanylate cyclase.
 
  
 0.846
RPE_4088
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3959 diguanylate cyclase (GGDEF domain).
 
  
 0.846
RPE_3333
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpb:RPB_2521 diguanylate cyclase.
  
 0.845
RPE_1839
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_1745 diguanylate cyclase (GGDEF domain).
 
 
 
 0.844
RPE_2358
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: rpb:RPB_4125 diguanylate cyclase.
 
  
 0.843
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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