STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4472PFAM: thioesterase superfamily protein; KEGG: rpb:RPB_4340 thioesterase superfamily. (142 aa)    
Predicted Functional Partners:
RPE_4471
PFAM: NUDIX hydrolase; KEGG: rpb:RPB_4339 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.629
plsX
Phosphate:acyl-[acyl carrier protein] acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.498
RPE_1847
KEGG: rpc:RPC_1755 hypothetical protein.
  
     0.489
RPE_4473
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rru:Rru_A2442 transcriptional regulator, XRE family.
       0.468
RPE_3819
PFAM: cyclic nucleotide-binding; KEGG: rpc:RPC_2203 cyclic nucleotide-binding domain (cNMP-BD) protein.
  
     0.436
RPE_1532
KEGG: rpc:RPC_1498 putative flagellar assembly protein.
  
     0.434
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
    0.429
RPE_4833
TIGRFAM: MJ0042 family finger-like protein; KEGG: rpc:RPC_4868 zinc finger/thioredoxin putative.
  
     0.422
RPE_1040
PFAM: flagellar hook-length control protein; KEGG: rpc:RPC_0986 flagellar hook-length control protein.
  
     0.421
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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