STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4476PFAM: HipA domain protein; KEGG: sat:SYN_02732 protein HipA. (419 aa)    
Predicted Functional Partners:
RPE_4477
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ftl:FTL_1126 transcriptional regulator.
 
 
 
 0.994
RPE_4473
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rru:Rru_A2442 transcriptional regulator, XRE family.
 
 
 
 0.961
aroK-2
Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
   
 
 0.894
RPE_3411
Transcriptional regulator, XRE family; TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: atc:AGR_pTi_183 DNA-binding protein.
 
 
 0.659
RPE_0201
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_0473 transcriptional regulator, XRE family.
  
 
 0.576
RPE_1394
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rpc:RPC_1378 transcriptional regulator, XRE family.
  
 
 0.576
RPE_1580
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpb:RPB_3757 transcriptional regulator, XRE family.
  
 
 0.576
RPE_1593
KEGG: lxx:Lxx24252 hypothetical protein.
  
 
 0.576
RPE_1625
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_03828 lactoylglutathione lyase.
  
 
 0.576
RPE_2442
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ret:RHE_CH00634 hypothetical protein.
  
 
 0.576
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.