STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4482PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpc:RPC_4415 protein tyrosine phosphatase. (156 aa)    
Predicted Functional Partners:
RPE_4483
PFAM: Uncharacterised conserved protein UCP032146; KEGG: rpb:RPB_4349 uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.
     0.891
RPE_0410
PFAM: Thioredoxin domain; KEGG: rpa:RPA0267 possible thioredoxin.
  
 
 0.725
RPE_0459
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rpa:RPA0073 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.725
RPE_3657
PFAM: Bile acid:sodium symporter; KEGG: rpd:RPD_3417 bile acid:sodium symporter.
 
  
 0.695
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.652
RPE_1236
PFAM: hydrogenase-1 expression HyaE; KEGG: rpd:RPD_1168 hydrogenase-1 expression HyaE; Belongs to the HupG/HyaE family.
  
 
 0.643
RPE_3659
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rpd:RPD_3419 low molecular weight phosphotyrosine protein phosphatase.
  
     0.643
RPE_0807
PFAM: lipopolysaccharide biosynthesis; KEGG: rru:Rru_A1490 protein-tyrosine kinase.
  
 
 0.632
RPE_2845
PFAM: lipopolysaccharide biosynthesis; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
  
 
 0.632
RPE_3498
PFAM: lipopolysaccharide biosynthesis; KEGG: ccr:CC0164 hypothetical protein.
  
 
 0.632
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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