STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4487KEGG: rpd:RPD_4280 hypothetical protein. (147 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
    0.800
RPE_4876
dCTP deaminase; PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: rpd:RPD_0904 2-deoxycytidine 5-triphosphate deaminase.
 
     0.739
hisS
PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; KEGG: rpb:RPB_1185 histidine--tRNA ligase.
  
     0.716
RPE_4393
PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rpa:RPA1065 metal dependent phosphohydrolase.
  
     0.714
RPE_0229
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0359 periplasmic sensor signal transduction histidine kinase.
  
     0.691
RPE_0641
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_0686 signal transduction histidine kinase, nitrogen specific, NtrB.
  
     0.635
RPE_0308
KEGG: nha:Nham_0406 hypothetical protein.
  
     0.628
RPE_0230
PFAM: response regulator receiver; KEGG: rpa:RPA0571 two-component transcriptional regulator RegR, fis family.
  
     0.616
RPE_0029
PFAM: protein of unknown function DUF1674; KEGG: nha:Nham_0198 protein of unknown function DUF1674.
  
     0.610
RPE_1874
PFAM: protein of unknown function DUF1491; KEGG: rpc:RPC_1781 protein of unknown function DUF1491.
  
     0.574
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.