STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4491KEGG: rpb:RPB_4355 hypothetical protein. (166 aa)    
Predicted Functional Partners:
RPE_4492
PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C6868 alpha/beta hydrolase.
 
     0.566
RPE_4490
PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_4420 alpha/beta hydrolase fold.
       0.529
RPE_3364
KEGG: rpc:RPC_2258 hypothetical protein.
  
     0.525
RPE_1004
KEGG: bja:bll4740 nonspecific acid phosphatase precursor.
  
     0.474
RPE_1866
KEGG: rpc:RPC_1772 hypothetical protein.
  
     0.448
RPE_4489
KEGG: rpc:RPC_4419 hypothetical protein.
       0.438
RPE_1260
TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rpa:RPA3710 possible ferredoxin-nitrite reductase.
  
     0.413
RPE_1259
Sulfite reductase (NADPH) alpha subunit; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; KEGG: rpb:RPB_1753 oxidoreductase, FAD/NAD(P)-binding.
  
     0.408
RPE_2309
KEGG: rpc:RPC_3147 hypothetical protein.
  
     0.402
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.