STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4495KEGG: rpc:RPC_4422 hypothetical protein. (148 aa)    
Predicted Functional Partners:
RPE_1297
PFAM: FAD dependent oxidoreductase; KEGG: rpd:RPD_3782 putative monooxygenase.
  
    0.652
RPE_3550
PFAM: nitroreductase; KEGG: rpd:RPD_3154 nitroreductase.
  
     0.513
RPE_3549
Nitroreductase; KEGG: rpd:RPD_3154 nitroreductase.
  
     0.490
RPE_4494
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rpc:RPC_4421 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.484
RPE_0757
PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpd:RPD_0976 2-nitropropane dioxygenase, NPD.
 
     0.460
RPE_4493
PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: bja:blr1249 hypothetical protein.
 
     0.449
RPE_4309
PFAM: cytochrome P450; KEGG: rpa:RPA1613 putative cytochrome P-450.
  
    0.408
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.