STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4499PFAM: protein of unknown function DUF1522; KEGG: rpa:RPA2297 hypothetical protein. (917 aa)    
Predicted Functional Partners:
RPE_4498
KEGG: rpd:RPD_2371 hypothetical protein.
 
  
 0.956
RPE_1527
PFAM: flagellar FlaF family protein; KEGG: rpa:RPA3913 putative flagellar protein FlaF.
 
  
 0.955
RPE_0780
KEGG: rpc:RPC_0868 flagellar protein FliS.
 
 
 0.949
RPE_1526
PFAM: flagellar FlbT family protein; KEGG: rpc:RPC_1491 flagellar FlbT.
 
  
 0.900
RPE_0781
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
 
 0.894
RPE_1551
Flagellar basal body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.852
RPE_1504
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpc:RPC_1486 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
  
 0.851
RPE_3544
KEGG: rpc:RPC_3400 hypothetical protein.
 
  
 0.842
RPE_1503
PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: rpb:RPB_3817 hypothetical protein.
 
  
 0.834
RPE_4371
KEGG: rpb:RPB_1632 hypothetical protein.
  
     0.772
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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