STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4537PFAM: NifZ family protein; KEGG: rpd:RPD_1068 NifZ. (100 aa)    
Predicted Functional Partners:
RPE_4535
PFAM: NifT/FixU family protein; KEGG: rpc:RPC_4466 NifT/FixU.
 
  
 0.971
RPE_4536
PFAM: NifZ family protein; KEGG: rpc:RPC_4467 NifZ.
 
   
 0.958
RPE_4541
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM domain protein; KEGG: rpc:RPC_4472 nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.942
RPE_4538
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: rpc:RPC_4469 tetratricopeptide TPR_2.
 
 
   0.924
RPE_4534
KEGG: rpc:RPC_4464 hypothetical protein.
 
    0.916
RPE_4539
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpc:RPC_4470 HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
  
 0.885
RPE_4527
PFAM: protein of unknown function DUF269; KEGG: rpc:RPC_4457 protein of unknown function DUF269.
 
    0.881
RPE_4528
TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: rpc:RPC_4458 dinitrogenase iron-molybdenum cofactor biosynthesis.
 
  
 0.869
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.862
RPE_4532
KEGG: rpc:RPC_4462 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1.
 
  
 0.856
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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