STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4554TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: bur:Bcep18194_B1068 haemagglutinin-like. (4092 aa)    
Predicted Functional Partners:
RPE_3467
PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: rpc:RPC_2921 hemolysin activation/secretion protein.
 
 
 0.841
RPE_3466
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_2920 MotA/TolQ/ExbB proton channel.
 
  
 0.803
RPE_3462
KEGG: rpc:RPC_2915 hypothetical protein.
 
    0.790
RPE_3461
KEGG: rpc:RPC_2914 hypothetical protein.
 
    0.786
RPE_4555
PFAM: FecR protein; KEGG: rpb:RPB_2206 putative FecR.
 
     0.772
RPE_3463
KEGG: rpb:RPB_2223 hypothetical protein.
 
     0.771
RPE_3465
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_2919 biopolymer transport protein ExbD/TolR.
 
    0.767
RPE_2654
PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_3129 secretin/TonB, short-like protein.
  
     0.685
RPE_2649
TIGRFAM: TonB family protein; KEGG: rpb:RPB_2211 hypothetical protein.
  
     0.677
RPE_4557
PFAM: Secretin/TonB, short N-terminal domain; KEGG: rpb:RPB_2211 hypothetical protein.
 
     0.669
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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