STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4571PFAM: chemotaxis sensory transducer; KEGG: bja:bll4376 hypothetical protein. (366 aa)    
Predicted Functional Partners:
RPE_3926
CheA signal transduction histidine kinases; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_3803 CheA signal transduction histidine kinases.
 
 
 0.899
RPE_4284
CheA signal transduction histidine kinases; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4247 CheA signal transduction histidine kinases.
 
 
 0.899
RPE_3925
PFAM: CheW domain protein; KEGG: rpc:RPC_3802 CheW protein.
 
 
 0.727
RPE_4283
PFAM: CheW domain protein; KEGG: rpc:RPC_4246 CheW protein.
 
 
 0.727
RPE_4675
CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4676 CheA signal transduction histidine kinases.
 
 
 0.681
RPE_3019
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpd:RPD_0337 chemotaxis sensory transducer.
  
     0.669
RPE_1193
CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: ccr:CC0433 chemotaxis protein CheA.
 
 
 0.655
RPE_3631
CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4607 CheA signal transduction histidine kinases.
 
 
 0.651
RPE_0046
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rpc:RPC_4406 methyl-accepting chemotaxis sensory transducer.
  
     0.641
RPE_1203
Putative CheA signal transduction histidine kinases; PFAM: Hpt domain protein.
  
 
 0.632
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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