STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4579PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_4540 MotA/TolQ/ExbB proton channel. (302 aa)    
Predicted Functional Partners:
RPE_4580
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_4541 biopolymer transport protein ExbD/TolR.
 
 
 0.983
RPE_0961
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_0937 biopolymer transport protein ExbD/TolR.
 
 
 0.950
RPE_3145
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpa:RPA2128 biopolymer transport protein ExbD/TolR.
 
 
 0.950
RPE_4709
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_4753 biopolymer transport protein ExbD/TolR.
 
 
 0.930
RPE_4581
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpc:RPC_4542 TonB-like.
 
 
 0.926
RPE_3465
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_2919 biopolymer transport protein ExbD/TolR.
 
 
 0.819
RPE_0962
TIGRFAM: TonB family protein; KEGG: rpc:RPC_0938 TonB-like.
 
 
 0.719
RPE_3144
TIGRFAM: TonB family protein; KEGG: rpa:RPA2129 possible energy transducer TonB, C-terminal region.
 
 
 0.718
RPE_3471
TIGRFAM: TonB family protein; KEGG: rpc:RPC_2906 TonB-like.
 
 
 0.709
RPE_4708
Putative TolA; KEGG: rpc:RPC_4752 putative TolA.
 
 
 0.700
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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