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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
RPE_4580PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_4541 biopolymer transport protein ExbD/TolR. (143 aa)    
Predicted Functional Partners:
RPE_4579
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_4540 MotA/TolQ/ExbB proton channel.
 
 
 0.983
RPE_0960
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_0936 MotA/TolQ/ExbB proton channel.
 
 
 0.936
RPE_3146
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpa:RPA2127 putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.935
RPE_4581
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: rpc:RPC_4542 TonB-like.
  
 
 0.935
tolQ
MotA/TolQ/ExbB proton channel; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.927
RPE_3466
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_2920 MotA/TolQ/ExbB proton channel.
 
 
 0.831
RPE_0962
TIGRFAM: TonB family protein; KEGG: rpc:RPC_0938 TonB-like.
 
 
 0.748
RPE_3997
KEGG: bpa:BPP0921 hypothetical protein.
  
 
 0.724
RPE_2199
KEGG: rpc:RPC_3245 hypothetical protein.
  
 
 0.714
RPE_4708
Putative TolA; KEGG: rpc:RPC_4752 putative TolA.
  
 
 0.714
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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