STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4593KEGG: rpc:RPC_1137 hypothetical protein. (168 aa)    
Predicted Functional Partners:
RPE_4823
KEGG: rpc:RPC_4859 hypothetical protein.
  
     0.773
RPE_2973
KEGG: rpc:RPC_2847 hypothetical protein.
  
     0.769
RPE_1408
KEGG: rpc:RPC_1401 hypothetical protein.
  
     0.762
RPE_2054
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_2143 BFD-like (2Fe-2S)-binding region.
  
     0.757
RPE_1996
KEGG: rpc:RPC_2084 hypothetical protein.
  
     0.754
RPE_4919
KEGG: rpc:RPC_4942 hypothetical protein.
  
     0.754
RPE_1873
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_1780 peptidoglycan-binding domain 1.
  
     0.753
RPE_1416
KEGG: rpc:RPC_1393 hypothetical protein.
  
     0.752
RPE_4165
KEGG: rpa:RPA4315 hypothetical protein.
  
     0.741
RPE_0322
PFAM: transcription activator, effector binding; KEGG: rpc:RPC_0216 transcription activator, effector binding.
  
     0.740
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.