STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4596TIGRFAM: putative regulatory protein, FmdB family; KEGG: rpa:RPA1256 putative formamidase regulatory protein FmdB. (114 aa)    
Predicted Functional Partners:
RPE_4597
Formamidase; PFAM: Acetamidase/Formamidase; KEGG: rpd:RPD_3859 formamidase.
 
   
 0.890
RPE_4598
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1256 ABC transporter related.
 
     0.849
RPE_4600
PFAM: inner-membrane translocator; KEGG: rpd:RPD_3862 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.830
RPE_4603
Periplasmic sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_1251 multi-sensor hybrid histidine kinase.
 
     0.823
RPE_4602
KEGG: rpd:RPD_3864 amide-UreA binding protein.
 
     0.817
RPE_4604
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rpd:RPD_3866 response regulator receiver.
 
    0.813
RPE_4599
PFAM: ABC transporter related; KEGG: rpd:RPD_3861 ABC transporter related.
 
     0.811
RPE_4601
PFAM: inner-membrane translocator; KEGG: rpb:RPB_1253 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.811
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.