STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4598PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1256 ABC transporter related. (229 aa)    
Predicted Functional Partners:
RPE_4600
PFAM: inner-membrane translocator; KEGG: rpd:RPD_3862 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
RPE_4601
PFAM: inner-membrane translocator; KEGG: rpb:RPB_1253 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.980
RPE_4602
KEGG: rpd:RPD_3864 amide-UreA binding protein.
 
 
 0.973
RPE_3739
PFAM: inner-membrane translocator; KEGG: rpc:RPC_3700 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.956
RPE_3740
PFAM: inner-membrane translocator; KEGG: rpc:RPC_3701 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.943
RPE_3741
Branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor; KEGG: rpd:RPD_3510 twin-arginine translocation pathway signal.
 
 
 0.935
RPE_4597
Formamidase; PFAM: Acetamidase/Formamidase; KEGG: rpd:RPD_3859 formamidase.
 
   
 0.908
RPE_3737
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_1798 ABC transporter related.
  
  
 
0.905
RPE_4596
TIGRFAM: putative regulatory protein, FmdB family; KEGG: rpa:RPA1256 putative formamidase regulatory protein FmdB.
 
     0.849
RPE_0595
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1019 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
0.823
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.