STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4606PFAM: protein of unknown function DUF1469; KEGG: rpc:RPC_4599 protein of unknown function DUF1469. (118 aa)    
Predicted Functional Partners:
RPE_4605
KEGG: rpc:RPC_4598 hypothetical protein.
 
     0.970
RPE_4607
KEGG: rpc:RPC_4600 late embryogenesis abundant protein.
 
     0.970
RPE_4608
PFAM: Late embryogenesis abundant protein; KEGG: rpc:RPC_4601 hypothetical protein.
 
     0.964
RPE_1748
PFAM: HWE histidine kinase; KEGG: rpc:RPC_4031 signal transduction histidine kinase.
  
     0.654
RPE_2704
PFAM: response regulator receiver; KEGG: rpc:RPC_2520 response regulator receiver domain protein (CheY-like).
  
     0.619
RPE_3654
PFAM: HWE histidine kinase; KEGG: rpc:RPC_0615 signal transduction histidine kinase.
  
     0.569
RPE_4609
PFAM: AMP-dependent synthetase and ligase; KEGG: rpb:RPB_1244 AMP-dependent synthetase and ligase.
       0.556
RPE_3639
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rpc:RPC_4597 ribonuclease BN, putative.
 
     0.489
RPE_1305
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
   
    0.472
RPE_4220
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rpc:RPC_4165 uroporphyrinogen III synthase HEM4.
  
    0.468
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.