STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4641Hypothetical protein. (643 aa)    
Predicted Functional Partners:
RPE_4642
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sil:SPOA0205 serine protease, subtilase family.
 
   
 0.934
RPE_4640
KEGG: sil:SPOA0203 hypothetical protein.
       0.803
RPE_3114
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_4085 phosphonate-binding periplasmic protein.
  
    0.624
RPE_4585
KEGG: ana:alr0276 hypothetical protein.
  
     0.590
RPE_2051
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: rpb:RPB_1928 phosphonate-binding periplasmic protein.
   
    0.572
RPE_2666
PFAM: Fimbrial assembly family protein; KEGG: bja:bll6015 putative general secretory pathway protein L.
  
     0.549
RPE_2660
KEGG: bja:bll6018 probable general secretion pathway protein H precursor.
  
   
 0.531
RPE_0652
PFAM: protein of unknown function DUF805; KEGG: rpc:RPC_0810 protein of unknown function DUF805.
   
  
 0.511
RPE_2668
KEGG: bja:blr6023 general secretion pathway protein O.
  
     0.460
RPE_4333
PFAM: Animal heme peroxidase; KEGG: gvi:glr3599 hypothetical protein.
  
  
 0.456
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.