STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4643PFAM: peptidase S1 and S6, chymotrypsin/Hap; phospholipase D/Transphosphatidylase; KEGG: rpc:RPC_3413 hypothetical protein. (962 aa)    
Predicted Functional Partners:
RPE_3251
Endonuclease; KEGG: eba:ebA6352 endonuclease.
    
 0.822
RPE_3044
KEGG: bja:bll1305 hypothetical protein.
  
     0.763
RPE_2198
PFAM: sulfatase; KEGG: rpc:RPC_3246 sulfatase.
  
   
 0.755
RPE_0811
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0759 hypothetical protein.
 
     0.754
RPE_4522
Nitrogen-fixing NifU domain protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.744
RPE_4524
PFAM: NifQ family protein; KEGG: rpc:RPC_4454 NifQ.
 
 
 
 0.738
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.717
RPE_4668
KEGG: rpc:RPC_4667 methyl-accepting chemotaxis sensory transducer.
 
     0.707
RPE_2347
PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like.
   
 
 0.704
RPE_1576
PFAM: Carotenoid oxygenase; KEGG: rpc:RPC_1536 carotenoid oxygenase.
  
  
 0.694
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.