STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4664PFAM: ABC-2 type transporter; KEGG: rpc:RPC_4663 ABC-2. (372 aa)    
Predicted Functional Partners:
RPE_4666
PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_4665 secretion protein HlyD.
 
  
 0.953
RPE_4665
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: rpc:RPC_4664 ABC transporter related.
 
 
0.945
RPE_1666
KEGG: rpb:RPB_3668 putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.719
RPE_1667
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA3789 putative ATP-binding component of a transport system.
  
 0.689
RPE_1668
PFAM: ABC-2 type transporter; KEGG: rpd:RPD_1794 ABC-2.
 
  
 
0.595
RPE_0228
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0358 ABC transporter related.
  
 0.572
RPE_2413
PFAM: Abortive infection protein; KEGG: rpc:RPC_2361 abortive infection protein.
  
  
 0.535
RPE_3322
PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_4021 secretion protein HlyD.
 
  
 0.517
RPE_2232
KEGG: rpd:RPD_0641 Cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase.
  
  
 0.495
RPE_2335
PFAM: nitroreductase; KEGG: bja:blr5540 hypothetical protein.
  
  
 0.495
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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