STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gfaGlutathione-dependent formaldehyde-activating, GFA; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family. (189 aa)    
Predicted Functional Partners:
RPE_4678
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA1955 glutathione dependent formaldehyde dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.966
RPE_4680
Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde.
 
  
 0.956
RPE_0851
PFAM: Pyrrolo-quinoline quinone; KEGG: bja:blr6213 methanol dehydrogenase large subunit-like protein.
 
  
 0.949
RPE_3139
PFAM: Pyrrolo-quinoline quinone; KEGG: rpc:RPC_1907 pyrrolo-quinoline quinone.
 
  
 0.931
RPE_3138
SMART: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_1908 extracellular solute-binding protein, family 3.
 
  
 0.927
RPE_3137
Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation.
     
 0.901
RPE_3129
KEGG: rpc:RPC_1917 MxaD protein, putative.
     
  0.900
RPE_3130
SMART: von Willebrand factor, type A; KEGG: rpc:RPC_1916 von Willebrand factor, type A.
     
  0.900
RPE_3131
KEGG: rpc:RPC_1915 hypothetical protein.
     
  0.900
RPE_3132
PFAM: von Willebrand factor, type A; KEGG: rpc:RPC_1914 von Willebrand factor, type A.
     
  0.900
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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