STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4724KEGG: rpa:RPA0942 hypothetical protein. (85 aa)    
Predicted Functional Partners:
RPE_4723
Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; KEGG: rpa:RPA0941 hypothetical protein.
     
 0.838
pgk
PFAM: phosphoglycerate kinase; KEGG: rpc:RPC_4770 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.625
RPE_4726
KEGG: rpc:RPC_4769 hypothetical protein.
       0.573
RPE_4720
KEGG: rpc:RPC_4775 Sel1-like.
       0.570
RPE_4721
PFAM: thiamine monophosphate synthase; KEGG: rpc:RPC_4774 thiamine monophosphate synthase.
       0.570
RPE_4722
PFAM: fructose-bisphosphate aldolase, class-I; KEGG: rpb:RPB_4471 fructose-bisphosphate aldolase.
       0.570
RPE_4727
Hypothetical protein.
       0.422
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.