STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4735Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: rpd:RPD_4160 sigma-70 region 2; Belongs to the sigma-70 factor family. (433 aa)    
Predicted Functional Partners:
RPE_4734
PFAM: DGPFAETKE family protein; KEGG: rpd:RPD_4161 hypothetical protein.
 
     0.940
RPE_4714
PFAM: DGPFAETKE family protein; KEGG: rpb:RPB_1804 DGPF protein.
 
     0.801
RPE_4736
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpc:RPC_4762 glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.750
RPE_4613
KEGG: rpc:RPC_4620 hypothetical protein.
 
     0.545
RPE_0704
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpd:RPD_4360 glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.503
RPE_1371
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr2408 hypothetical protein.
 
     0.498
RPE_1372
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bja:blr2409 hypothetical protein.
 
     0.403
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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