STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4741KEGG: rpc:RPC_4780 hypothetical protein. (180 aa)    
Predicted Functional Partners:
RPE_4740
PFAM: peptidase U32; KEGG: rpc:RPC_4779 peptidase U32.
 
  
 0.980
RPE_4739
PFAM: peptidase U32; KEGG: rpc:RPC_4778 peptidase U32.
 
  
 0.945
RPE_4742
TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rpc:RPC_4781 carboxylyase-related protein; Belongs to the UbiD family.
 
     0.690
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
   
 0.665
RPE_3094
PFAM: FMN-binding domain protein; KEGG: rpb:RPB_3141 FMN-binding.
 
    0.603
RPE_0832
KEGG: rpc:RPC_2959 putative outer membrane protein precursor.
  
     0.601
RPE_4738
KEGG: rpc:RPC_4777 hypothetical protein.
       0.565
RPE_2913
PFAM: ETC complex I subunit conserved region; KEGG: rpb:RPB_2935 ETC complex I subunit conserved region.
  
  
 0.517
RPE_0411
PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region.
  
     0.515
RPE_3099
PFAM: NosL family protein; KEGG: rpc:RPC_0432 NosL.
 
    0.505
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.