STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4744KEGG: rpd:RPD_4330 hypothetical protein. (200 aa)    
Predicted Functional Partners:
RPE_4745
KEGG: rpd:RPD_4331 hypothetical protein.
 
     0.898
RPE_4746
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rpd:RPD_4332 helix-turn-helix type 3.
 
     0.674
RPE_2632
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.585
RPE_2319
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.554
RPE_4496
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: rpd:RPD_2373 regulatory protein, LuxR.
  
     0.533
RPE_4620
Agarase; KEGG: rpc:RPC_4624 hypothetical protein.
  
     0.509
RPE_3238
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: rpc:RPC_2997 filamentous haemagglutinin-like.
  
     0.506
RPE_1416
KEGG: rpc:RPC_1393 hypothetical protein.
  
     0.497
RPE_4696
PFAM: branched-chain amino acid transport; KEGG: rpb:RPB_1825 branched-chain amino acid transport.
  
     0.493
RPE_3544
KEGG: rpc:RPC_3400 hypothetical protein.
  
     0.491
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.