STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4792PFAM: ABC-3 protein; KEGG: rpc:RPC_4829 ABC-3. (292 aa)    
Predicted Functional Partners:
RPE_4791
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_4828 ABC transporter related.
 
 
 0.997
RPE_4793
PFAM: periplasmic solute binding protein; KEGG: rpb:RPB_4557 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.995
RPE_2839
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein.
 
 
 0.973
RPE_2840
PFAM: periplasmic solute binding protein; KEGG: sil:SPO3366 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.963
RPE_4790
KEGG: nha:Nham_3429 hypothetical protein.
       0.810
mntH
Mn2+/Fe2+ transporter, NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
  
 0.703
RPE_4795
SMART: WD-40 repeat protein; KEGG: rpc:RPC_4832 WD-40 repeat.
 
     0.592
RPE_4794
PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rpb:RPB_4556 cobalamin synthesis protein, P47K.
  
  
 0.537
RPE_2837
PFAM: ABC-3 protein; KEGG: jan:Jann_2083 ABC-3.
  
  
 
0.536
RPE_2838
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: jan:Jann_2082 ABC-3.
  
  
 
0.523
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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