STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4802PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rpc:RPC_4837 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (380 aa)    
Predicted Functional Partners:
RPE_2678
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rpc:RPC_2929 arginase; Belongs to the arginase family.
  
 
 0.936
RPE_3166
PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpa:RPA2051 putative ornithine decarboxylase.
    
 0.928
RPE_1819
PFAM: aminotransferase class-III; KEGG: rpc:RPC_1728 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.926
RPE_4799
PFAM: homospermidine synthase; KEGG: rpc:RPC_4834 homospermidine synthase.
 
     0.793
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.659
RPE_4801
PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA0869 GCN5-related N-acetyltransferase.
 
     0.577
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.558
tal
Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.531
RPE_2980
PFAM: aminotransferase, class I and II; Allinase-like; KEGG: rpc:RPC_2860 aminotransferase, class I and II.
 
  
 0.489
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
  
 0.487
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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