STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4844PFAM: protein of unknown function DUF1428; KEGG: rpd:RPD_0934 protein of unknown function DUF1428. (119 aa)    
Predicted Functional Partners:
RPE_4843
PFAM: Redoxin domain protein; KEGG: rpc:RPC_4876 thioredoxin-like.
       0.587
RPE_0904
PFAM: AsmA family protein; KEGG: rpd:RPD_1004 AsmA.
   
    0.510
RPE_2141
PFAM: AsmA family protein; KEGG: rpc:RPC_3274 AsmA.
   
    0.510
RPE_4079
PFAM: AsmA family protein; KEGG: rpc:RPC_3951 AsmA.
   
    0.510
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: rpc:RPC_4875 argininosuccinate lyase.
       0.463
RPE_1372
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bja:blr2409 hypothetical protein.
 
     0.429
RPE_3903
PFAM: CsbD family protein; KEGG: hch:HCH_05492 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.425
RPE_4736
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpc:RPC_4762 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.424
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.