STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4852PFAM: ribonuclease BN; KEGG: rpc:RPC_4883 ribonuclease BN. (297 aa)    
Predicted Functional Partners:
RPE_0434
PFAM: protein of unknown function DUF1150; KEGG: rpc:RPC_0410 protein of unknown function DUF1150.
  
     0.647
RPE_4851
KEGG: rpd:RPD_0928 hypoxia induced protein conserved region.
       0.640
RPE_2319
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.611
RPE_2632
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.600
RPE_4850
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rpc:RPC_4881 ATP; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.556
RPE_1408
KEGG: rpc:RPC_1401 hypothetical protein.
  
     0.551
RPE_3639
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rpc:RPC_4597 ribonuclease BN, putative.
  
     0.549
RPE_4140
KEGG: rpc:RPC_4085 hypothetical protein.
  
     0.548
RPE_2794
PFAM: Invasion associated locus B family protein; KEGG: rpc:RPC_2614 invasion associated locus B.
  
     0.509
RPE_4095
PFAM: sodium/calcium exchanger membrane region; KEGG: rpc:RPC_3965 sodium/calcium exchanger membrane region.
  
    0.499
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.