STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4867KEGG: rpd:RPD_2376 cytochrome c family protein. (193 aa)    
Predicted Functional Partners:
RPE_3094
PFAM: FMN-binding domain protein; KEGG: rpb:RPB_3141 FMN-binding.
  
  
 0.850
nosZ
Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
  
  
 0.794
RPE_0621
PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.745
RPE_0478
Oxidoreductase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding; KEGG: rpb:RPB_0333 twin-arginine translocation pathway signal.
   
 
 0.734
RPE_1688
PFAM: oxidoreductase, molybdopterin binding; KEGG: rpc:RPC_1672 oxidoreductase, molybdopterin binding.
   
 
 0.734
RPE_3072
Sulfur dehydrogenase subunit SoxC; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rpd:RPD_4252 twin-arginine translocation pathway signal.
   
 
 0.734
RPE_3986
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_1938 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.639
RPE_0831
TIGRFAM: cytochrome C family protein; KEGG: rpc:RPC_2960 cytochrome.
 
   
 0.532
RPE_2087
KEGG: rpb:RPB_2455 hypothetical protein.
 
     0.456
RPE_3975
KEGG: rpc:RPC_1925 hypothetical protein.
 
     0.449
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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