STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4870PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpa:RPA4763 possible cation efflux pump. (468 aa)    
Predicted Functional Partners:
RPE_4728
KEGG: rpc:RPC_4767 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.715
RPE_0449
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.690
RPE_1316
PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1262 squalene/phytoene synthase.
   
 
 0.553
RPE_1811
PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1717 squalene/phytoene synthase.
   
 
 0.553
RPE_1812
PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1718 squalene/phytoene synthase.
   
 
 0.553
RPE_2904
KEGG: rpc:RPC_2773 phytoene synthase.
   
 
 0.553
RPE_4665
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: rpc:RPC_4664 ABC transporter related.
  
  
 0.508
RPE_4871
KEGG: rpb:RPB_0795 L-sorbosone dehydrogenase.
       0.504
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.