STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4873PFAM: protein of unknown function DUF820; KEGG: rpc:RPC_0006 protein of unknown function DUF820. (206 aa)    
Predicted Functional Partners:
RPE_4748
PFAM: protein of unknown function DUF433; KEGG: rpa:RPA0826 DUF433.
  
     0.713
RPE_2627
PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2499 protein of unknown function DUF433.
  
     0.688
RPE_0134
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
  
   
 0.678
RPE_0133
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
  
   
 0.674
RPE_0295
KEGG: rpc:RPC_0185 hypothetical protein.
  
     0.605
RPE_4874
PFAM: protein of unknown function DUF820; KEGG: rpc:RPC_4289 hypothetical protein.
      
0.531
RPE_2423
KEGG: rpb:RPB_2524 hypothetical protein.
  
     0.527
vapC-5
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.475
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.415
RPE_3246
PFAM: PilT protein domain protein; KEGG: mlo:mlr5903 plasmid stabilization protein.
  
     0.406
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.