STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_4878PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rpc:RPC_4910 lipolytic enzyme, G-D-S-L. (316 aa)    
Predicted Functional Partners:
RPE_4880
KEGG: rpc:RPC_4912 putative OpgC protein.
 
     0.935
RPE_4879
KEGG: rpc:RPC_4911 hypothetical protein.
 
    
0.907
RPE_2973
KEGG: rpc:RPC_2847 hypothetical protein.
  
     0.619
RPE_2311
KEGG: rpc:RPC_3145 hypothetical protein.
  
     0.613
RPE_2914
KEGG: rpc:RPC_2784 putative OpgC protein.
 
     0.597
RPE_1914
TIGRFAM: phiE125 gp8 family; KEGG: rpc:RPC_1813 phage conserved hypothetical protein, phiE125 gp8.
  
 
 0.582
RPE_1956
KEGG: rpc:RPC_1852 hypothetical protein.
  
     0.579
RPE_4593
KEGG: rpc:RPC_1137 hypothetical protein.
  
     0.579
RPE_0557
KEGG: rpc:RPC_0152 hypothetical protein.
 
   
 0.559
apaG
PFAM: ApaG domain protein; KEGG: rpc:RPC_4913 ApaG.
       0.557
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.